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Elisa Franco
California Institute of Technology
Activity Feed
- is following 5 new articles in My PublicationsGeometry of unsteady fluid transport during fluid–structure interactions. FRANCO ELISA (2007) J. Fluid Mech..Distributed Fault Diagnosis using Sensor Networks and Consensus-based Filters. Franco Elisa (2006) Proceedings of the 45th IEEE Conference on Decision and Control.Design and stability analysis of cooperative receding-horizon control of linear discrete-time agents. Franco Elisa (2007) Int. J. Robust Nonlinear Control.Cooperative Constrained Control of Distributed Agents With Nonlinear Dynamics and Delayed Information Exchange: A Stabilizing Receding-Horizon Approach. Franco Elisa (2008) IEEE Trans. Automat. Contr..Stable receding-horizon cooperative control of a class of distributed agents. Franco E. () Proceedings of the 2005, American Control Conference, 2005..March 4, 2010Login or register to post comments
- created an event in Caltech BioControlLogin or register to post commentsFriday, February 12, 2010 - 9:00am at Steele libraryIs genetic evolution predictable?. Stern DL (2009) Science.
- created an event in Caltech BioControlFriday, November 27, 2009 - 10:00am at Steele Library
What about this paper? If you have better ideas, let me know.
Evolvability and hierarchy in rewired bacterial gene networks. Isalan M (2008) Nature.Login or register to post commentsWe did that one last year - it made it into the top of '07-'08. I'd suggest the new paper from Wingreen and Bassler (et al.). - Joshua K. Michener (Caltech) November 20, 2009 Comment deletedOh I must have missed that meeting! Thanks for pointing that out... - Elisa Franco (Caltech) November 28, 2009 Comment deleted - created an event in Caltech BioControlLogin or register to post commentsFriday, October 30, 2009 - 10:00am at Steele Library
Paper about noise...
Molecular Systems Biology 5 Article number: 318 doi:10.1038/msb.2009.75
Published online: 13 October 2009
Citation: Molecular Systems Biology 5:318Listening to the noise: random fluctuations reveal gene network parameters
Brian Munsky1, Brooke Trinh2 & Mustafa Khammash3
- created an event in Caltech BioControlLogin or register to post commentsFriday, October 16, 2009 - 10:00am at Steele libraryKinetic Buffering of Cross Talk between Bacterial Two-Component Sensors. Groban Eli S. (2009) Journal of Molecular Biology.
- created an event in Caltech BioControlLogin or register to post commentsWednesday, October 7, 2009 - 10:30am at Steele Library
Potential date for starting our meetings again! I picked a random paper...
Synthetic biology: The yin and yang of nature. Gore Jeff (2009) Nature. - is following 6 new articles in Caltech BioControl: Best of 07-08Evolvability and hierarchy in rewired bacterial gene networks. Isalan M (2008) Nature.Molecular computation of solutions to combinatorial problems. Adleman LM (1994) Science.Growth factor-induced MAPK network topology shapes Erk response determining PC-12 cell fate. Santos SD (2007) Nat Cell Biol.Using engineered scaffold interactions to reshape MAP kinase pathway signaling dynamics. Bashor CJ (2008) Science.Real-time kinetics of gene activity in individual bacteria. Golding I (2005) Cell.The frequency dependence of osmo-adaptation in Saccharomyces cerevisiae. Mettetal JT (2008) Science.September 10, 2009Login or register to post comments
- is following 10 new articles in Caltech BioControl: Best of 06-07Accurate prediction of gene feedback circuit behavior from component properties. Rosenfeld N (2007) Mol Syst Biol.Enzyme-free nucleic acid logic circuits. Seelig G (2006) Science.Transient dynamics of genetic regulatory networks. Bennett MR (2007) Biophys J.Physical limits to biochemical signaling. Bialek W (2005) Proc Natl Acad Sci U S A.Stochastic focusing: fluctuation-enhanced sensitivity of intracellular regulation. Paulsson J (2000) Proc Natl Acad Sci U S A.Detection of multistability, bifurcations, and hysteresis in a large class of biological positive-feedback systems. Angeli D (2004) Proc Natl Acad Sci U S A.Improving lycopene production in Escherichia coli by engineering metabolic control. Farmer WR (2000) Nat Biotechnol.RNA synthetic biology. Isaacs FJ (2006) Nat Biotechnol.Network motifs: simple building blocks of complex networks. Milo R (2002) Science.Guiding bacteria with small molecules and RNA. Topp S (2007) J Am Chem Soc.September 10, 2009Login or register to post comments
- created the Caltech BioControl journal club.September 10, 2009
- is following 1 new article in BioControlComplexity in bacterial cell-cell communication: quorum signal integration and subpopulation signaling in the Bacillus subtilis phosphorelay. Bischofs IB (2009) Proc Natl Acad Sci U S A.September 10, 2009Login or register to post comments
- joined JournalFire!August 1, 2009
- created an event in Caltech BioControlLogin or register to post commentsWednesday, May 13, 2009 - 10:00am at Steele Library
Phosphorelays
Complexity in bacterial cell-cell communication: quorum signal integration and subpopulation signaling in the Bacillus subtilis phosphorelay. Bischofs IB (2009) Proc Natl Acad Sci U S A. - created an event in Caltech BioControlLogin or register to post commentsWednesday, May 6, 2009 - 10:00am at Steele Library
signaling network
integration of multiple signals
EGF, Insulin MAPK cascadesSystems-level interactions between insulin-EGF networks amplify mitogenic signaling. Borisov N (2009) Mol Syst Biol. - created an event in Caltech BioControlLogin or register to post commentsWednesday, April 29, 2009 - 10:00am at Steele Library
* Leibler
* evolution of cooperationSimpson's paradox in a synthetic microbial system. Chuang JS (2009) Science. - created an event in Caltech BioControlLogin or register to post commentsWednesday, April 22, 2009 - 10:00am at Steele Library
Ultrasensitivity and molecular titration
Molecular titration and ultrasensitivity in regulatory networks. Buchler NE (2008) J Mol Biol. - created an event in Caltech BioControlLogin or register to post commentsWednesday, April 15, 2009 - 10:00am at Steele Library
Negative feedback and linearization
Negative autoregulation linearizes the dose-response and suppresses the heterogeneity of gene expression. Nevozhay D (2009) Proc Natl Acad Sci U S A. - created an event in Caltech BioControlLogin or register to post commentsWednesday, April 8, 2009 - 10:00am at Steele Library
Stress transient transcriptional responses
Transient transcriptional responses to stress are generated by opposing effects of mRNA production and degradation. Shalem O (2008) Mol Syst Biol. - created an event in Caltech BioControlLogin or register to post commentsWednesday, April 8, 2009 - 10:00am at Steele Library
Modeling and experiments to understand mechanisms of gene regulation by sRNA in bacteria
Quantitative characteristics of gene regulation by small RNA. Levine E (2007) PLoS Biol. - created an event in Caltech BioControlLogin or register to post commentsWednesday, March 18, 2009 - 10:00am at Steele Library
Control of Stem Cell Proliferation and Lineages
Cell lineages and the logic of proliferative control. Lander AD (2009) PLoS Biol. - created an event in Caltech BioControlLogin or register to post commentsWednesday, February 25, 2009 - 10:00am at Steele Library
Synthetic Controller to tune fitness tradeoffs.
Or, following up on our "Endy" topic with "Smolke" :P -F
Synthetic control of a fitness tradeoff in yeast nitrogen metabolism. Bayer TS (2009) J Biol Eng. - created an event in Caltech BioControlLogin or register to post commentsWednesday, February 18, 2009 - 10:00am at Steele Library
Drew Endy
* Is Drew the author or the topic?
Determination of cell fate selection during phage lambda infection. St-Pierre F (2008) Proc Natl Acad Sci U S A. - created an event in Caltech BioControlLogin or register to post commentsWednesday, February 4, 2009 - 10:00am at Steele Library
robust gene networks
Survival of the sparsest: robust gene networks are parsimonious. Leclerc RD (2008) Mol Syst Biol. - created an event in Caltech BioControlLogin or register to post commentsWednesday, January 28, 2009 - 10:00am at Steele Library
complex regulation of genes in yeast due to nucleosome positioning
Chromatin decouples promoter threshold from dynamic range. Lam FH (2008) Nature. - created an event in Caltech BioControlLogin or register to post commentsWednesday, January 21, 2009 - 10:00am at Steele Library
synthetic promoters
Analysis of combinatorial cis-regulation in synthetic and genomic promoters. Gertz J (2009) Nature. - created an event in Caltech BioControlLogin or register to post commentsWednesday, December 3, 2008 - 10:00am at Steele Library
Quantitative models of gene expression in Yeast
A quantitative model of transcription factor-activated gene expression. Kim HD (2008) Nat Struct Mol Biol. - created an event in Caltech BioControlLogin or register to post commentsWednesday, November 19, 2008 - 10:00am at Steele Library
* Activity motifs
* principles of timing
* transcriptional control
* yeast
* metabolic networksComments:
Promising, but ultimately disappointing. The curve fitting to the mRNA data was not convincing (the shape of the data did not match the fit). Measurements (mRNA and ChIP-chip in particular) should probably have large error bars, bringing fine distinctions in timing or affinity into question. Time resolution was also questionable - the first measurement was taken at 15 minutes, but differences in activation time of 3 minutes vs. 4 minutes were treated as significant. No data was presented to support the claim on correlation between binding affinity motifs and transcriptional activation motifs, and the conclusions were presented in a confusing fashion (why claim that 20/48 data sets showed correlation, rather than breaking things out by individual motifs?).
Activity motifs reveal principles of timing in transcriptional control of the yeast metabolic network. Chechik G (2008) Nat Biotechnol. - created an event in Caltech BioControlLogin or register to post commentsWednesday, November 12, 2008 - 10:00am at Steele Library
A better repressilator
A fast, robust and tunable synthetic gene oscillator. Stricker J (2008) Nature. - created an event in Caltech BioControlLogin or register to post commentsWednesday, November 5, 2008 - 9:00am at Steele Library
Biophysics of gene regulation
A stochastic single-molecule event triggers phenotype switching of a bacterial cell. Choi PJ (2008) Science. - created an event in Caltech BioControlLogin or register to post commentsWednesday, October 29, 2008 - 10:00am at Steele Library
Cellular computing
Higher-order cellular information processing with synthetic RNA devices. Win MN (2008) Science.