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Caltech Ge/Bi 246: Environmental Viruses : Seminar Discussion Articles

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  • Interesting Virus-Related Articles Found by Group Members (7)
  • Seminar Additional Reading (5)
  • Seminar Discussion Articles (12)
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  • Jena Johnson (Caltech) is following 1 new article in Caltech Geobiology : Suggested Papers for Discussion
    Photosynthesis genes in marine viruses yield proteins during host infection. Lindell Debbie (2005) Nature.
    April 22, 2011
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  • Victoria Orphan (Caltech) to Caltech Ge/Bi 246: Environmental Viruses

    Faculty of 1000 review:
    This thorough study of viral dynamics in marine sediments constitutes a major advancement in understanding the roles of viruses in microbial communities and ecosystems. The picture emerging from more than 200 sediment samples taken in four distinct sea basins is that viral production and virus-mediated bacterial mortality are extraordinarily high and increase with water depth, thus extending the now well established significance of virioplankton to marine sediments, especially in the deep sea, where a very large fraction of the Earth’s prokaryotes resides. Similar observations have been made in smaller-scale studies of other marine sediments; however, the results contrast sharply with the lack of significant directly detectable viral infection in freshwater benthic habitats, which had fostered speculation that the roles of viruses in benthic systems could be far less important than in pelagic environments.

    Major viral impact on the functioning of benthic deep-sea ecosystems. Danovaro Roberto (2008) Nature.
    February 12, 2010
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  • Victoria Orphan (Caltech) to Caltech Ge/Bi 246: Environmental Viruses

    Faculty of 1000 review of Heidelberg et al 2009 article:

    These authors present a fascinating story on the warfare between viruses and bacteria within a microbial mat community.
    Comparative analysis of the highly variable CRISPR spacer or ‘viritope’ sequences present in the genomes of two cyanobacteria isolated from a hot spring microbial mat community and in the metagenome of the viruses within the mat provided insight into the population dynamics and the co-evolution of the cyanobacteria and their viruses. These findings might further our understanding on the role of viruses in shaping microbial diversity, which is a highly unexplored topic.

    Germ warfare in a microbial mat community: CRISPRs provide insights into the co-evolution of host and viral genomes. Heidelberg JF (2009) PLoS One.
    February 12, 2010
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  • Anne Dekas (Caltech) is following 12 new articles in Caltech Ge/Bi 246: Environmental Viruses: Seminar Discussion Articles
    The Concept of Virus. Lwoff A. (1957) Microbiology.
    Virus movement maintains local virus population diversity. Snyder J. C. (2007) Proceedings of the National Academy of Sciences.
    The virophage as a unique parasite of the giant mimivirus. La Scola B (2008) Nature.
    Viral Glycosphingolipids Induce Lytic Infection and Cell Death in Marine Phytoplankton. Vardi A. (2009) Science.
    Microbiology. Variety--the splice of life--in microbial communities. Banfield JF (2009) Science.
    Prophages in marine bacteria: dangerous molecular time bombs or the key to survival in the seas?. Paul John H (2008) ISME J.
    The ancient Virus World and evolution of cells. Koonin EV (2006) Biol Direct.
    Viruses manipulate the marine environment. Rohwer Forest (2009) Nature.
    Photosynthesis genes in marine viruses yield proteins during host infection. Lindell Debbie (2005) Nature.
    Germ warfare in a microbial mat community: CRISPRs provide insights into the co-evolution of host and viral genomes. Heidelberg JF (2009) PLoS One.
    Infection Paradox: High Abundance but Low Impact of Freshwater Benthic Viruses. Filippini M. (2006) Applied and Environmental Microbiology.
    Major viral impact on the functioning of benthic deep-sea ecosystems. Danovaro Roberto (2008) Nature.
    January 21, 2010
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  • Postgenomic

    New and tantalizing facts continue to emerge from those on the frontlines studying the giant viruses. A recent paper by La Scola et al. reports the discovery of a novel virus found in amoebas that requires mimivirus for replication. This defective virus has

    http://schaechter.asmblog.org/schaechter/2008/10/news-from-the-d.html

    The virophage as a unique parasite of the giant mimivirus. La Scola B (2008) Nature.
    October 2, 2008
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  • Postgenomic

    This morning it was announced that two American scientists won the Nobel Prize in Physiology and or Medicine, for their 1998 discovery of a hidden network of genes. It may seem odd that a network of genes could lurk undiscovered for so long. But the cell is

    http://scienceblogs.com/loom/2006/10/02/a_nobel_prize_for_the_shadow_n.php

    The ancient Virus World and evolution of cells. Koonin EV (2006) Biol Direct.
    October 1, 2006
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