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Caltech Geobiology : Related Papers

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  • Jonathan Wilson (Caltech) is following 1 new article in Caltech Geobiology : Related Papers
    Comparing Photosynthetic and Photovoltaic Efficiencies and Recognizing the Potential for Improvement. Blankenship R. E. (2011) Science.
    May 12, 2011
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  • Woody Fischer (Caltech) is following 1 new article in Caltech Geobiology : Discussion Papers
    The Evolution and Future of Earth's Nitrogen Cycle. Canfield D. E. (2010) Science.
    October 24, 2010
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  • Woody Fischer (Caltech) is following 1 new article in Caltech Geobiology : Related Papers
    The Evolution and Future of Earth's Nitrogen Cycle. Canfield D. E. (2010) Science.
    October 24, 2010
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  • Jena Johnson (Caltech) to Caltech Geobiology

    Any interest in looking into the nitrogen cycle 2.5 billion years ago?

    Isotopic Evidence for an Aerobic Nitrogen Cycle in the Latest Archean. Garvin J. (2009) Science.
    July 24, 2010
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  • Jena Johnson (Caltech)

    Any interest in looking into the nitrogen cycle 2.5 billion years ago?

    Isotopic Evidence for an Aerobic Nitrogen Cycle in the Latest Archean. Garvin J. (2009) Science.
    July 24, 2010
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  • Woody Fischer (Caltech) is following 1 new article in Caltech Geobiology : Related Papers
    Geomicrobiology: Sediment reactions defy dogma. Nealson Kenneth H. (2010) Nature.
    May 10, 2010
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  • Woody Fischer (Caltech) is following 1 new article in Caltech Geobiology : Related Papers
    A chemical screen for biological small molecule-RNA conjugates reveals CoA-linked RNA. Kowtoniuk W. E. (2009) Proceedings of the National Academy of Sciences.
    April 26, 2010
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  • Anne Dekas (Caltech) created an event in Caltech Geobiology
    Journal Article Discussion
    Thursday, December 17, 2009 - 8:00am at Chandler Dining Hall

    Sorry for the late notice, but yes, there will be breakfast tomorrow at journal club! We have a special pre-winter break breakfast, so be there a few minutes early to take advantage.

    A "silent" polymorphism in the MDR1 gene changes substrate specificity. Kimchi-Sarfaty C (2007) Science.
    December 16, 2009
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  • Woody Fischer (Caltech) is following 1 new article in Caltech Geobiology : Discussion Papers
    A "silent" polymorphism in the MDR1 gene changes substrate specificity. Kimchi-Sarfaty C (2007) Science.
    December 14, 2009
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  • Jonathan Wilson (Caltech) is following 1 new article in Caltech Geobiology : Related Papers
    Evolution of Animal Pollination. Ollerton J. (2009) Science.
    November 6, 2009
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  • Anne Dekas (Caltech) is following 1 new article in Caltech Geobiology : Related Papers
    Fast Growth Increases the Selective Advantage of a Mutation Arising Recurrently during Evolution under Metal Limitation. Chou Hsin-Hung (2009) PLoS Genet.
    November 5, 2009
    From the author's summary: "Effects of mutations can change under different genetic backgrounds or environmental factors, also known as epistasis and genotype-by-environment interactions (G×E), respectively. Though epistasis and G×E are traditionally treated as distinct phenomena, our study of a beneficial mutation highlights their commonality." - Anne Dekas (Caltech) November 5, 2009 Comment deleted
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  • Jonathan Wilson (Caltech) is following 1 new article in Caltech Geobiology : Related Papers
    A "silent" polymorphism in the MDR1 gene changes substrate specificity. Kimchi-Sarfaty C (2007) Science.
    November 5, 2009
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  • Woody Fischer (Caltech) is following 3 new articles in Caltech Geobiology : Related Papers
    Isotopic Evidence for an Aerobic Nitrogen Cycle in the Latest Archean. Garvin J. (2009) Science.
    Review. Electrons, life and the evolution of Earth's oxygen cycle. Falkowski Paul G. (2008) Philosophical Transactions of the Royal Society B: Biological Sciences.
    The co-evolution of the nitrogen, carbon and oxygen cycles in the Proterozoic ocean. Fennel K. (2005) American Journal of Science.
    September 16, 2009
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  • Jake V. Bailey (University of Minnesota, Twin Cities) is following 1 new article in Caltech Geobiology : Related Papers
    Multiple Rubisco forms in proteobacteria: their functional significance in relation to CO2 acquisition by the CBB cycle. Badger M. R. (2007) Journal of Experimental Botany.
    September 15, 2009
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  • Jake V. Bailey (University of Minnesota, Twin Cities) to Caltech Geobiology

    This paper discusses the presence of multiple forms of Rubisco within the genomes of certain bacteria. I thought it might be of interest following last week's discussion.

    Multiple Rubisco forms in proteobacteria: their functional significance in relation to CO2 acquisition by the CBB cycle. Badger M. R. (2007) Journal of Experimental Botany.
    September 15, 2009
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  • Woody Fischer (Caltech) is following 1 new article in Caltech Geobiology : Related Papers
    A unified theory for the basis of the limitations of the primary reaction of photosynthetic CO2 fixation: Was Dr. Pangloss right?. Gutteridge S. (2006) Proceedings of the National Academy of Sciences.
    September 9, 2009
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  • Anne Dekas (Caltech) is following 1 new article in Caltech Geobiology : Related Papers
    Early Earth: Oxygen for heavy-metal fans. Lyons Timothy W (2009) Nature.
    September 9, 2009
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  • Jonathan Wilson (Caltech)

    Perspectives from PNAS.

    A unified theory for the basis of the limitations of the primary reaction of photosynthetic CO2 fixation: Was Dr. Pangloss right?. Gutteridge S. (2006) Proceedings of the National Academy of Sciences.
    September 2, 2009
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  • Anne Dekas (Caltech) is following 1 new article in Caltech Geobiology : Related Papers
    The worm turned, and the ocean followed. Lyons T. W. (2009) Proceedings of the National Academy of Sciences.
    September 1, 2009
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  • Anne Dekas (Caltech) created an event in Caltech Geobiology
    Journal Article Discussion
    Thursday, September 3, 2009 - 9:30am at Chandler Dining Hall

    The Commentary piece by Tim Lyons will not be the focus of the discussion but may be helpful in understanding the context of the Canfield paper.

    The worm turned, and the ocean followed. Lyons T. W. (2009) Proceedings of the National Academy of Sciences.
    September 1, 2009
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  • Anne Dekas (Caltech) is following 1 new article in Caltech Geobiology : Related Papers
    Bistability, Epigenetics, and Bet-Hedging in Bacteria. Veening Jan-Willem (2008) Annu. Rev. Microbiol..
    August 20, 2009
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  • Anne Dekas (Caltech) to Caltech Geobiology

    This is the other paper mentioned this morning.

    Bistability, Epigenetics, and Bet-Hedging in Bacteria. Veening Jan-Willem (2008) Annu. Rev. Microbiol..
    August 20, 2009
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  • Anne Dekas (Caltech) is following 1 new article in Caltech Geobiology : Related Papers
    Feedbacks, Timescales, and Seeing Red. Roe Gerard (2009) Annu. Rev. Earth Planet. Sci..
    August 20, 2009
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  • Anne Dekas (Caltech) to Caltech Geobiology

    This is one of the papers Woody recommended this morning.

    Feedbacks, Timescales, and Seeing Red. Roe Gerard (2009) Annu. Rev. Earth Planet. Sci..
    August 20, 2009
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  • Anne Dekas (Caltech) is following 1 new article in Caltech Geobiology : Related Papers
    Hybridization, ecological races and the nature of species: empirical evidence for the ease of speciation. Mallet James (2008) Philosophical Transactions of the Royal Society B: Biological Sciences.
    August 3, 2009
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  • Anne Dekas (Caltech) is following 1 new article in Caltech Geobiology : Related Papers
    Extensive mosaic structure revealed by the complete genome sequence of uropathogenic Escherichia coli. Welch R. A. (2002) Proceedings of the National Academy of Sciences.
    August 3, 2009
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  • Anne Dekas (Caltech) to Caltech Geobiology

    This paper compares 3 E. coli genomes and finds that "amazingly, only 39.2% of their combined (nonredundant) set of proteins actually are common to all three strains," suggesting greater genome diversity within a single species than was previously understood.

    Extensive mosaic structure revealed by the complete genome sequence of uropathogenic Escherichia coli. Welch R. A. (2002) Proceedings of the National Academy of Sciences.
    August 3, 2009
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  • Anne Dekas (Caltech) to Caltech Geobiology

    A historical discussion of species that may be relevant to our Aug 6th meeting.

    Hybridization, ecological races and the nature of species: empirical evidence for the ease of speciation. Mallet James (2008) Philosophical Transactions of the Royal Society B: Biological Sciences.
    August 3, 2009
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  • Postgenomic

    Another mechanism by which synonymous mutations may affect protein function is by altering the kinetics of protein folding. Researchers have proposed that synonymous substitutions that change a codon read by an abundant tRNA to a codon read by a rare tRNA could

    http://feeds.nature.com/~r/chemistry/rss/the_sceptical_chymist_with_comm...

    A "silent" polymorphism in the MDR1 gene changes substrate specificity. Kimchi-Sarfaty C (2007) Science.
    January 22, 2009
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  • Postgenomic

    ...when it specifies a different fold! At least that's the latest word from Kimchi-Sarfaty et. al., who reported in the Jan 26 issue of Science that a supposedly "silent" mutation in the multidrug resistance gene MDR1 changes the function of the encoded protein.

    http://www.gnxp.com/blog/2007/02/when-is-synonymous-sequence-not.php

    A "silent" polymorphism in the MDR1 gene changes substrate specificity. Kimchi-Sarfaty C (2007) Science.
    February 8, 2007
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