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Anne Dekas
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Micron-scale mapping of sulfur cycling across the oxycline of a cyanobacterial mat: a paired nanoSIMS and CARD-FISH approach.

Fike DA, Gammon CL, Ziebis W, Orphan VJ

ISME J. 2008 Jul; 2(7): 749-59.


Abstract

The metabolic activities of microbial mats have likely regulated biogeochemical cycling over most of Earth's history. However, the relationship between metabolic activity and the establishment of isotopic geochemical gradients in these mats remains poorly constrained. Here we present a parallel microgeochemical and microbiological study of micron-scale sulfur cycling within hypersaline microbial mats from Guerrero Negro, Baja California Sur, Mexico. Dissolved sulfide within the mats was captured on silver discs and analyzed for its abundance and delta(34)S isotopic composition using high-resolution secondary ion mass spectrometry (nanoSIMS). These results were compared to sulfide and oxygen microelectrode profiles. Two-dimensional microgeochemical mapping revealed well-defined laminations in sulfide concentration (on scales from 1 to 200 microm), trending toward increased sulfide concentrations at depth. Sulfide delta(34)S decreased from approximately +10 per thousand to -20 per thousand in the uppermost 3 mm and oscillated repeatedly between -10 per thousand and -30 per thousand down to a depth of 8 mm. These variations are attributed to spatially variable bacterial sulfate reduction within the mat. A parallel examination of the spatial distribution of known sulfate-reducing bacteria within the family Desulfobacteraceae was conducted using catalyzed reporter deposition fluorescence in situ hybridization. Significant concentrations of Desulfobacteraceae were observed in both oxic and anoxic zones of the mat and occurred in several distinct layers, in large aggregates and heterogeneously dispersed as single cells throughout. The spatial distribution of these microorganisms is consistent with the variation in sulfide concentration and isotopic composition we observed. The parallel application of the methodologies developed here can shed light on micron-scale sulfur cycling within microbially dominated sedimentary environments.

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  • David Johnston (Harvard University) created an event in Harvard Geobiology
    Geobio discussion group
    Friday, November 6, 2009 - 4:00pm at HUCE seminar room

    We will use these papers as a vehicle to discuss scales of observation

    November 2, 2009
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  • Anne Dekas (Caltech) is following 4 new articles in Orphan Lab publications
    Diverse syntrophic partnerships from deep-sea methane vents revealed by direct cell capture and metagenomics. Pernthaler A (2008) Proc Natl Acad Sci U S A.
    Planktonic and sediment-associated aerobic methanotrophs in two seep systems along the North American margin. Tavormina PL (2008) Appl Environ Microbiol.
    Micron-scale mapping of sulfur cycling across the oxycline of a cyanobacterial mat: a paired nanoSIMS and CARD-FISH approach. Fike DA (2008) ISME J.
    Temporal evolution of methane cycling and phylogenetic diversity of archaea in sediments from a deep-sea whale-fall in Monterey Canyon, California. Goffredi SK (2008) ISME J.
    February 3, 2009
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