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Elisa Franco
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Structural sources of robustness in biochemical reaction networks.

Shinar G, Feinberg M

Science. 2010 Mar 12; 327(5971): 1389-91.


Abstract

In vivo variations in the concentrations of biomolecular species are inevitable. These variations in turn propagate along networks of chemical reactions and modify the concentrations of still other species, which influence biological activity. Because excessive variations in the amounts of certain active species might hamper cell function, regulation systems have evolved that act to maintain concentrations within tight bounds. We identify simple yet subtle structural attributes that impart concentration robustness to any mass-action network possessing them. We thereby describe a large class of robustness-inducing networks that already embraces two quite different biochemical modules for which concentration robustness has been observed experimentally: the Escherichia coli osmoregulation system EnvZ-OmpR and the glyoxylate bypass control system isocitrate dehydrogenase kinase-phosphatase-isocitrate dehydrogenase. The structural attributes identified here might confer robustness far more broadly.

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  • Elisa Franco (Caltech) created an event in Caltech BioControl
    Next journal club
    Saturday, April 24, 2010 - 1:40pm at Steele 110

    This paper uses all the tools of chemical reaction networks we are talking about this week. I put my notes about CRNs from the BioControl class website, they might be useful to read the paper.
    http://www.cds.caltech.edu/~elisa/CDS270-4-2010/CDS270-4-2010-Week4-1.pdf

    April 20, 2010
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